Postcopulatory sexual selection

The female reproductive tract is where competition between the sperm of different males takes place, aided and abetted by the female herself. Intense postcopulatory sexual selection fosters inter-sexual conflict and drives rapid evolutionary change to generate a startling diversity of morphological, behavioural and physiological adaptations. We identify three main issues that should be resolved to advance our understanding of postcopulatory sexual selection. We need to determine the genetic basis of different male fertility traits and female traits that mediate sperm selection; identify the genes or genomic regions that control these traits; and establish the coevolutionary trajectory of sexes

Diversity analysis of 80,000 wheat accessions reveals consequences and opportunities of selection footprints

Undomesticated wild species, crop wild relatives, and landraces represent sources of variation for wheat improvement to address challenges from climate change and the growing human population. Here, we study 56,342 domesticated hexaploid, 18,946 domesticated tetraploid and 3,903 crop wild relatives in a massive-scale genotyping and diversity analysis. Using DArTseqTM technology, we identify more than 300,000 high-quality SNPs and SilicoDArT markers and align them to three reference maps: the IWGSC RefSeq v1.0 genome assembly, the durum wheat genome assembly (cv. Svevo), and the DArT genetic map. On average, 72% of the markers are uniquely placed on these maps and 50% are linked to genes. The analysis reveals landraces with unexplored diversity and genetic footprints defined by regions under selection. This provides fertile ground to develop wheat varieties of the future by exploring specific gene or chromosome regions and identifying germplasm conserving allelic diversity missing in current breeding programs

Both habitat change and local lek structure influence patterns of spatial loss and recovery in a black grouse population

The final publication is available at Springer via http://dx.doi.org/10.1007/s10144-015-0484-3Land use change is a major driver of declines in wildlife populations. Where human economic or recreational interests and wildlife share landscapes this problem is exacerbated. Changes in UK black grouse Tetrao tetrix populations are thought to have been strongly influenced by upland land use change. In a long-studied population within Perthshire, lek persistence is positively correlated with lek size, and remaining leks clustered most strongly within the landscape when the population is lowest, suggesting that there may be a demographic and/or spatial context to the reaction of the population to habitat changes. Hierarchical cluster analysis of lek locations revealed that patterns of lek occupancy when the population was declining were different to those during the later recovery period. Response curves from lek-habitat models developed using MaxEnt for periods with a declining population, low population, and recovering population were consistent across years for most habitat measures. We found evidence linking lek persistence with habitat quality changes and more leks which appeared between 1994 and 2008 were in improving habitat than those which disappeared during the same period. Generalised additive models (GAMs) identified changes in woodland and starting lek size as being important indicators of lek survival between declining and low/recovery periods. There may also have been a role for local densities in explaining recovery since the population low point. Persistence of black grouse leks was influenced by habitat, but changes in this alone did not fully account for black grouse declines. Even when surrounded by good quality habitat, leks can be susceptible to extirpation due to isolation

Novel iterative min-max clustering to minimize information loss in statistical disclosure control

In recent years, there has been an alarming increase of online identity theft and attacks using personally identifiable information. The goal of privacy preservation is to de-associate individuals from sensitive or microdata information. Microaggregation techniques seeks to protect microdata in such a way that can be published and mined without providing any private information that can be linked to specific individuals. Microaggregation works by partitioning the microdata into groups of at least k records and then replacing the records in each group with the centroid of the group. An optimal microaggregation method must minimize the information loss resulting from this replacement process. The challenge is how to minimize the information loss during the microaggregation process. This paper presents a new microaggregation technique for Statistical Disclosure Control (SDC). It consists of two stages. In the first stage, the algorithm sorts all the records in the data set in a particular way to ensure that during microaggregation very dissimilar observations are never entered into the same cluster. In the second stage an optimal microaggregation method is used to create k-anonymous clusters while minimizing the information loss. It works by taking the sorted data and simultaneously creating two distant clusters using the two extreme sorted values as seeds for the clusters. The performance of the proposed technique is compared against the most recent microaggregation methods. Experimental results using benchmark datasets show that the proposed algorithm has the lowest information loss compared with a basket of techniques in the literature

A Topological Representation of Branching Neuronal Morphologies

The online version of this article (https://doi.org/10.1007/s12021-017-9341-1) contains supplementary material, which is available to authorized users. Among others, we thank Athanassia Chalimourda and Katherine Turner for helpful conversations in various stages of this research and Jay Coggan for a critical reading of the manuscript. We also thank Hanchuan Peng and Xiaoxiao Liu for providing and curating the BigNeuron datasets. This work was supported by funding for the Blue Brain Project (BBP) from the ETH Domain. P.D. and R.L. were supported part by the Blue Brain Project and by the start-up grant of KH. Partial support for P.D. has been provided by the Advanced Grant of the European Research Council GUDHI (Geometric Understanding in Higher Dimensions). MS was supported by the SNF NCCR “Synapsy”.Peer reviewedPublisher PD

Global variation in anastomosis and end colostomy formation following left-sided colorectal resection

Background End colostomy rates following colorectal resection vary across institutions in high-income settings, being influenced by patient, disease, surgeon and system factors. This study aimed to assess global variation in end colostomy rates after left-sided colorectal resection. Methods This study comprised an analysis of GlobalSurg-1 and -2 international, prospective, observational cohort studies (2014, 2016), including consecutive adult patients undergoing elective or emergency left-sided colorectal resection within discrete 2-week windows. Countries were grouped into high-, middle- and low-income tertiles according to the United Nations Human Development Index (HDI). Factors associated with colostomy formation versus primary anastomosis were explored using a multilevel, multivariable logistic regression model. Results In total, 1635 patients from 242 hospitals in 57 countries undergoing left-sided colorectal resection were included: 113 (6·9 per cent) from low-HDI, 254 (15·5 per cent) from middle-HDI and 1268 (77·6 per cent) from high-HDI countries. There was a higher proportion of patients with perforated disease (57·5, 40·9 and 35·4 per cent; P < 0·001) and subsequent use of end colostomy (52·2, 24·8 and 18·9 per cent; P < 0·001) in low- compared with middle- and high-HDI settings. The association with colostomy use in low-HDI settings persisted (odds ratio (OR) 3·20, 95 per cent c.i. 1·35 to 7·57; P = 0·008) after risk adjustment for malignant disease (OR 2·34, 1·65 to 3·32; P < 0·001), emergency surgery (OR 4·08, 2·73 to 6·10; P < 0·001), time to operation at least 48 h (OR 1·99, 1·28 to 3·09; P = 0·002) and disease perforation (OR 4·00, 2·81 to 5·69; P < 0·001). Conclusion Global differences existed in the proportion of patients receiving end stomas after left-sided colorectal resection based on income, which went beyond case mix alone

Albany Thicket Biome

Please help us populate SUNScholar with the post print version of this article. It can be e-mailed to: [email protected] en Dierkund

Calculation of Breath-by-Breath Oxygen Uptake in Asthmatic Patients by the \u201cIndependent Breath\u201d Algorithm. Comparison with a Classical Approach

Several computation algorithms are available to determine gas exchange on a breath-by-breath basis, each designed on the basis of different theoretical backgrounds, including the newly proposed \u201cIndependent breath\u201d algorithm. The new algorithm was tested on the respiratory signals acquired from 11 asthmatic patients and 20 well-matched healthy controls, comparing results also with those provided by a \u201cclassical\u201d algorithm commonly applied by other laboratories. Oxygen, carbon dioxide fractions, and ventilatory flow were recorded at the mouth continuously over 26 min in all the volunteers at rest, during unloaded and moderate intensity cycling and subsequent recovery. Average oxygen uptake values calculated for the 4 steady-state conditions (over 3 min), as well as the corresponding standard deviations, were not significantly different between the two groups of subjects (MANOVA, Group effect, p\u2009=\u2009ns). Almost all the average oxygen uptake values provided by the two algorithms were overlapping, the large majority lying within 5% from the identity line. The corresponding standard deviations obtained for the \u201cIndependent breath\u201d algorithm were lower than those obtained for the \u201cclassical\u201d algorithm (MANOVA, Algorithm effect, p\u2009<\u20090.001), the slope of the regression line between them amounting to 0.672. In conclusion, because of its better precision, with similar accuracy, compared to the \u201cclassical\u201d real-time breath-by-breath algorithm, the use of the \u201cIndependent breath\u201d algorithm should be recommended, also in asthmatic patients